Bioinformatics Lab, Institute of Psychology, CAS

Published Web Server
i-GSEA4GWASv2: a web server for functional analysis of SNPs in trait-associated pathways identified from genome-wide association study

Publications：
Zhang, K.L.*, Chang, S.H.*, Guo, L.Y., Wang, J. (2014) I-GSEA4GWAS v2: a web server for functional analysis of SNPs in trait-associated pathways identified from genome-wide association study. Protein & Cell. DOI 10.1007/s13238-014-0114-4

ICSNPathway: Identify candidate Causal SNPs and Pathways from genome-wide association study by one analytical framework

Publication:
Zhang, K.L, Chang, S.H., Cui, S.J., Guo, L.Y., Zhang, L.Y., and Wang, J., 2011 ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework. Nucleic Acids Res., doi:10.1093/nar/gkr391

i-GSEA4GWAS: Improved-Gene Set Enrichment Analysis for Genome-Wide Association Study

Publication:
Zhang, K.L, Cui, S.J., Chang, S.H., Zhang, L.Y., Wang, J. 2010. i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study . Nucleic Acids Res; doi: 10.1093/nar/gkq324.

Published Databases
rVarBase: an updated database for regulatory features of human variants

Publication:
Guo, L., Du, Y., Qu, S., & Wang, J. (2015). rVarBase: an updated database for regulatory features of human variants. Nucleic Acids Res. doi: 10.1093/nar/gkv1107

rSNPBase: A Database for Curated Regulatory SNPs

Publication:
Guo, L., Du, Y., Chang, S., Zhang, K. and Wang, J. (2013) rSNPBase: a database for curated regulatory SNPs. Nucleic Acids Res. 42 (D1): D1033-D1039. doi:10.1093/nar/gkt1167

BDgene: Genetic Database for Bipolar Disorder & Its Overlap with Schizophrenia and Major Depressive Disorder

Publication:
Chang, S., Gao, L., Li, Z., Zhang, W., Du, Y. and Wang, J. (2013) BDgene: a genetic database for bipolar disorder and its overlap with schizophrenia and major depressive disorder. Biological Psychiatry. doi:10.1016/j.biopsych.2013.04.016.

MK4MDD: Multi-level Knowledge Base for Major Depressive Disorder

Publication:
Guo, L., Zhang, W., Chang, S., Zhang, L., Ott, J. and Wang, J. (2012) MK4MDD: A Multi-Level Knowledge Base and Analysis Platform for Major Depressive Disorder. PLoS ONE, 7, e46335.

ADHDgene: Genetic Database for Attention Deficit Hyperactivity Disorder

Publication:
Zhang, L.Y., Chang, S.H., Li, Z., Zhang, K.L., Du, Y., Ott, J., and Wang, J., 2011 ADHDgene: a genetic database for attention deficit hyperactivity disorder. Nucleic Acids Res., 1-7, doi:10.1093/nar/gkr99

CS-DEGs:? An online database for analyzing and applying differentially expressed genes from rodent models of chronic stress

Publication:
Guo, L.Y.*, Du, Y., Chang, S.H., Zhang, W.N., Wang, J#. (2014). Applying differentially expressed genes from rodent models of chronic stress to researches of stress-related disease: an online database. Psychosomatic Medicine. 76(8):644-9

MethyCancer: Database of Human DNA Methylation and Cancer

Publication:
He, X.M., Chang, S.H., Zhang, J.J., Zhao, Q., Xiang, H.Z., …, and Wang, J. 2008. MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res. 36: D836-841.

MyBASE: Mycobacterium Database

Publication:
Zhu, X.X, Chang, S.H., Fang, K.C., Cui, S.J., Liu, J., …, Wang, J. 2009. MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium. BMC Microbiology. 9:40.

IVDB: Influenza Virus Database

Publication：
Chang, S. H., Zhang, J. J., Liao, X. Y., Zhu, X. X., Wang, D. H., …, and Wang, J. 2007. Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res. 35: D376-380.

ChickVD: Chicken Variation Database

Publication：
Wang, J., He, X.M., Ruan, J., Dai, M.T., Chen, J., et al. 2005. ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. 33: D438-441.

SilkDB: Silkworm Knowledgebase

Publication：
Wang, J., Xia, Q.Y., He, X. M., Dai, M.T., Ruan, J., et al. 2005. SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res. 33: D399-402.

RIS: Rice Information System

Publication：
Zhao, W.M., Wang, J., He, X.M. Huang, X.B, Jiao, Y.Z., et al. 2004. BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 32: D377-382.

Copyright Bioinformatics Lab, Institute of Psychology, CAS. Last update: July 6, 2015
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