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  • 已开发的Web服务

  • i-GSEA4GWASv2: 基于基因集/通路的全基因组关联数据分析平台升级版
    发表文章：
    Zhang, K.L.*, Chang, S.H.*, Guo, L.Y., Wang, J. (2014) I-GSEA4GWAS v2: a web server for functional analysis of SNPs in trait-associated pathways identified from genome-wide association study. Protein & Cell. DOI 10.1007/s13238-014-0114-4


  • ICSNPathway: 基于GWAS鉴定候选致病SNP和通路的分析框架
    发表文章：
    Zhang, K.L, Chang, S.H., Cui, S.J., Guo, L.Y., Zhang, L.Y., and Wang, J., 2011 ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework. Nucleic Acids Res., doi:10.1093/nar/gkr391


  • i-GSEA4GWAS: 基于基因集/通路的全基因组关联数据分析平台
    发表文章：
    Zhang, K.L, Cui, S.J., Chang, S.H., Zhang, L.Y., Wang, J. 2010. i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study . Nucleic Acids Res; doi: 10.1093/nar/gkq324.




  • 已开发的数据库

  • rVarBase: 人类全基因组调控型变异数据库
    发表文章：
    Guo, L., Du, Y., Qu, S., & Wang, J. (2015). rVarBase: an updated database for regulatory features of human variants. Nucleic Acids Res. doi: 10.1093/nar/gkv1107


  • rSNPBase: 人类全基因组调控型单核苷酸多态性位点数据库
    发表文章：
    Guo, L., Du, Y., Chang, S., Zhang, K., & Wang, J. (2014). rSNPBase: a database for curated regulatory SNPs. Nucleic Acids Res, 42 (D1): D1033-D1039. doi: 10.1093/nar/gkt1167


  • BDgene: 双相情感障碍遗传学数据及与精神分裂症和重度抑郁症的交叉数据库
    发表文章：
    Chang, S., Gao, L., Li, Z., Zhang, W., Du, Y. and Wang, J. (2013) BDgene: a genetic database for bipolar disorder and its overlap with schizophrenia and major depressive disorder. Biological Psychiatry. doi:10.1016/j.biopsych.2013.04.016


  • MK4MDD: 重度抑郁症多层次知识库
    发表文章：
    Guo, L., Zhang, W., Chang, S., Zhang, L., Ott, J. and Wang, J. (2012) MK4MDD: A Multi-Level Knowledge Base and Analysis Platform for Major Depressive Disorder. PLoS ONE, 7, e46335.


  • ADHDgene: 注意缺陷多动障碍遗传学数据库
    发表文章：
    Zhang, L.Y., Chang, S.H., Li, Z., Zhang, K.L., Du, Y., Ott, J., and Wang, J., (2011) ADHDgene: a genetic database for attention deficit hyperactivity disorder. Nucleic Acids Res., 1-7, doi:10.1093/nar/gkr99


  • CS-DEGs:慢性应激诱导差异表达基因数据库
    发表文章：
    Guo, L.Y.*, Du, Y., Chang, S.H., Zhang, W.N., Wang, J#. (2014). Applying differentially expressed genes from rodent models of chronic stress to researches of stress-related disease: an online database. Psychosomatic Medicine. 76(8):644-9


  • MyBASE: 结核分枝杆菌数据库
    发表文章：
    Zhu, X.X, Chang, S.H., Fang, K.C., Cui, S.J., Liu, J., …, Wang, J. (2009). MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium. BMC Microbiology. 9:40.


  • MethyCancer: DNA甲基化与癌症数据库
    发表文章：
    He, X.M., Chang, S.H., Zhang, J.J., Zhao, Q., Xiang, H.Z., …, and Wang, J. (2008). MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res. 36: D836-841.


  • IVDB: 流感病毒数据库
    发表文章：
    Chang, S. H., Zhang, J. J., Liao, X. Y., Zhu, X. X., Wang, D. H., …, and Wang, J. (2007). Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res. 35: D376-380.


  • ChickVD: 家鸡多态性数据库
    发表文章：
    Wang, J., He, X.M., Ruan, J., Dai, M.T., Chen, J., et al. (2005) ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. 33: D438-441.


  • SilkDB: 家蚕基因组数据库
    发表文章：
    Wang, J., Xia, Q.Y., He, X. M., Dai, M.T., Ruan, J., et al. (2005) SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res. 33: D399-402.


  • BGI-RIS: 水稻信息库系统
    发表文章：
    Zhao, W.M., Wang, J., He, X.M. Huang, X.B, Jiao, Y.Z., et al. (2004) BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 32: D377-382.



版权：中国科学院心理研究所生物信息实验室。最后一次更新：2015年7月6日
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